口服食物挑战(OFC)对于准确诊断患者的食物过敏至关重要。但是,患者不愿接受OFC,对于那些这样做的患者,在农村/社区医疗保健环境中,对过敏症患者的使用率有限。通过机器学习方法对OFC结果的预测可以促进在家中食品过敏原的删除,在OFC中改善患者和医师的舒适度,并通过最大程度地减少执行的OFC的数量来节省医疗资源。临床数据是从共同接受1,284个OFC的1,12例患者那里收集的,包括临床因素,包括血清特异性IgE,总IgE,皮肤刺测试(SPTS),症状,性别和年龄。使用这些临床特征,构建了机器学习模型,以预测花生,鸡蛋和牛奶挑战的结果。每种过敏原的最佳性能模型是使用凹入和凸内核(LUCCK)方法创建的,该方法在曲线(AUC)(AUC)下分别用于花生,鸡蛋和牛奶OFC预测为0.76、0.68和0.70, 。通过Shapley添加说明(SHAP)的模型解释表明,特定的IgE以及SPTS的Wheal和Flare值高度预测了OFC结果。该分析的结果表明,机器学习有可能预测OFC结果,并揭示了相关的临床因素进行进一步研究。
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We present a machine-learning framework to accurately characterize morphologies of Active Galactic Nucleus (AGN) host galaxies within $z<1$. We first use PSFGAN to decouple host galaxy light from the central point source, then we invoke the Galaxy Morphology Network (GaMorNet) to estimate whether the host galaxy is disk-dominated, bulge-dominated, or indeterminate. Using optical images from five bands of the HSC Wide Survey, we build models independently in three redshift bins: low $(0<z<0.25)$, medium $(0.25<z<0.5)$, and high $(0.5<z<1.0)$. By first training on a large number of simulated galaxies, then fine-tuning using far fewer classified real galaxies, our framework predicts the actual morphology for $\sim$ $60\%-70\%$ host galaxies from test sets, with a classification precision of $\sim$ $80\%-95\%$, depending on redshift bin. Specifically, our models achieve disk precision of $96\%/82\%/79\%$ and bulge precision of $90\%/90\%/80\%$ (for the 3 redshift bins), at thresholds corresponding to indeterminate fractions of $30\%/43\%/42\%$. The classification precision of our models has a noticeable dependency on host galaxy radius and magnitude. No strong dependency is observed on contrast ratio. Comparing classifications of real AGNs, our models agree well with traditional 2D fitting with GALFIT. The PSFGAN+GaMorNet framework does not depend on the choice of fitting functions or galaxy-related input parameters, runs orders of magnitude faster than GALFIT, and is easily generalizable via transfer learning, making it an ideal tool for studying AGN host galaxy morphology in forthcoming large imaging survey.
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While skin cancer classification has been a popular and valuable deep learning application for years, there has been little consideration of the context in which testing images are taken. Traditional melanoma classifiers rely on the assumption that their testing environments are analogous to the structured images on which they are trained. This paper combats this notion, arguing that mole size, a vital attribute in professional dermatology, is a red herring in automated melanoma detection. Although malignant melanomas are consistently larger than benign melanomas, this distinction proves unreliable and harmful when images cannot be contextually scaled. This implementation builds a custom model that eliminates size as a training feature to prevent overfitting to incorrect parameters. Additionally, random rotation and contrast augmentations are performed to simulate the real-world use of melanoma detection applications. Several custom models with varying forms of data augmentation are implemented to demonstrate the most significant features of the generalization abilities of mole classifiers. These implementations show that user unpredictability is crucial when utilizing such applications. The caution required when manually modifying data is acknowledged, as data loss and biased conclusions are necessary considerations in this process. Additionally, mole size inconsistency and its significance are discussed in both the dermatology and deep learning communities.
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Self-supervised image denoising techniques emerged as convenient methods that allow training denoising models without requiring ground-truth noise-free data. Existing methods usually optimize loss metrics that are calculated from multiple noisy realizations of similar images, e.g., from neighboring tomographic slices. However, those approaches fail to utilize the multiple contrasts that are routinely acquired in medical imaging modalities like MRI or dual-energy CT. In this work, we propose the new self-supervised training scheme Noise2Contrast that combines information from multiple measured image contrasts to train a denoising model. We stack denoising with domain-transfer operators to utilize the independent noise realizations of different image contrasts to derive a self-supervised loss. The trained denoising operator achieves convincing quantitative and qualitative results, outperforming state-of-the-art self-supervised methods by 4.7-11.0%/4.8-7.3% (PSNR/SSIM) on brain MRI data and by 43.6-50.5%/57.1-77.1% (PSNR/SSIM) on dual-energy CT X-ray microscopy data with respect to the noisy baseline. Our experiments on different real measured data sets indicate that Noise2Contrast training generalizes to other multi-contrast imaging modalities.
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This technical report presents GPS++, the first-place solution to the Open Graph Benchmark Large-Scale Challenge (OGB-LSC 2022) for the PCQM4Mv2 molecular property prediction task. Our approach implements several key principles from the prior literature. At its core our GPS++ method is a hybrid MPNN/Transformer model that incorporates 3D atom positions and an auxiliary denoising task. The effectiveness of GPS++ is demonstrated by achieving 0.0719 mean absolute error on the independent test-challenge PCQM4Mv2 split. Thanks to Graphcore IPU acceleration, GPS++ scales to deep architectures (16 layers), training at 3 minutes per epoch, and large ensemble (112 models), completing the final predictions in 1 hour 32 minutes, well under the 4 hour inference budget allocated. Our implementation is publicly available at: https://github.com/graphcore/ogb-lsc-pcqm4mv2.
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Many scientific domains gather sufficient labels to train machine algorithms through human-in-the-loop techniques provided by the Zooniverse.org citizen science platform. As the range of projects, task types and data rates increase, acceleration of model training is of paramount concern to focus volunteer effort where most needed. The application of Transfer Learning (TL) between Zooniverse projects holds promise as a solution. However, understanding the effectiveness of TL approaches that pretrain on large-scale generic image sets vs. images with similar characteristics possibly from similar tasks is an open challenge. We apply a generative segmentation model on two Zooniverse project-based data sets: (1) to identify fat droplets in liver cells (FatChecker; FC) and (2) the identification of kelp beds in satellite images (Floating Forests; FF) through transfer learning from the first project. We compare and contrast its performance with a TL model based on the COCO image set, and subsequently with baseline counterparts. We find that both the FC and COCO TL models perform better than the baseline cases when using >75% of the original training sample size. The COCO-based TL model generally performs better than the FC-based one, likely due to its generalized features. Our investigations provide important insights into usage of TL approaches on multi-domain data hosted across different Zooniverse projects, enabling future projects to accelerate task completion.
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There is an increasing need in our society to achieve faster advances in Science to tackle urgent problems, such as climate changes, environmental hazards, sustainable energy systems, pandemics, among others. In certain domains like chemistry, scientific discovery carries the extra burden of assessing risks of the proposed novel solutions before moving to the experimental stage. Despite several recent advances in Machine Learning and AI to address some of these challenges, there is still a gap in technologies to support end-to-end discovery applications, integrating the myriad of available technologies into a coherent, orchestrated, yet flexible discovery process. Such applications need to handle complex knowledge management at scale, enabling knowledge consumption and production in a timely and efficient way for subject matter experts (SMEs). Furthermore, the discovery of novel functional materials strongly relies on the development of exploration strategies in the chemical space. For instance, generative models have gained attention within the scientific community due to their ability to generate enormous volumes of novel molecules across material domains. These models exhibit extreme creativity that often translates in low viability of the generated candidates. In this work, we propose a workbench framework that aims at enabling the human-AI co-creation to reduce the time until the first discovery and the opportunity costs involved. This framework relies on a knowledge base with domain and process knowledge, and user-interaction components to acquire knowledge and advise the SMEs. Currently,the framework supports four main activities: generative modeling, dataset triage, molecule adjudication, and risk assessment.
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准确性是当前工作的关键重点,用于时间序列分类。但是,许多应用程序中的速度和数据降低同样重要,尤其是当数据量表和存储需求迅速增加时。当前的MTSC算法需要数百个计算小时才能完成培训和预测。这是由于多元时间序列数据的性质,该数据随时间序列,其长度和通道数量而增长。在许多应用程序中,并非所有渠道都对分类任务有用。因此,我们需要可以有效选择有用的渠道并节省计算资源的方法。我们提出并评估两种用于渠道选择的方法。我们的技术通过由原型时间序列表示每个类,并根据类之间的原型距离执行通道选择。主要假设是有用的通道可以在类之间进行更好的分离。因此,类原型之间具有较高距离的通道更有用。在UEA多元时间序列分类(MTSC)基准上,我们表明这些技术可实现显着的数据降低和分类器加速,以达到类似的分类精度。在训练最先进的MTSC算法之前,将通道选择作为预处理步骤,并节省了约70 \%的计算时间和数据存储,并保留了精确度。此外,我们的方法使甚至可以使用不使用通道选择或前向通道选择的有效分类器(例如Rocket)获得了更好的准确性。为了进一步研究我们的技术的影响,我们介绍了对具有100多个通道的合成多元时间序列数据集进行分类的实验,以及在具有50个渠道的数据集上进行的真实世界案例研究。我们的渠道选择方法可通过保留或提高的精度可显着减少数据。
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近年来,在平衡(超级)图分配算法的设计和评估中取得了重大进展。我们调查了过去十年的实用算法的趋势,用于平衡(超级)图形分区以及未来的研究方向。我们的工作是对先前有关该主题的调查的更新。特别是,该调查还通过涵盖了超图形分区和流算法来扩展先前的调查,并额外关注并行算法。
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超越地球轨道的人类空间勘探将涉及大量距离和持续时间的任务。为了有效减轻无数空间健康危害,数据和空间健康系统的范式转移是实现地球独立性的,而不是Earth-Reliance所必需的。有希望在生物学和健康的人工智能和机器学习领域的发展可以解决这些需求。我们提出了一个适当的自主和智能精密空间健康系统,可以监控,汇总和评估生物医学状态;分析和预测个性化不良健康结果;适应并响应新累积的数据;并提供对其船员医务人员的个人深度空间机组人员和迭代决策支持的预防性,可操作和及时的见解。在这里,我们介绍了美国国家航空航天局组织的研讨会的建议摘要,以便在太空生物学和健康中未来的人工智能应用。在未来十年,生物监测技术,生物标志科学,航天器硬件,智能软件和简化的数据管理必须成熟,并编织成精确的空间健康系统,以使人类在深空中茁壮成长。
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